PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.F02029.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MIKC_MADS
Protein Properties Length: 238aa    MW: 27201.8 Da    PI: 6.8605
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.F02029.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF88.63.3e-28958150
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                    +rien++nrqvtfskRr+g++KKA+EL +LCdaev +i+fsstg+ly++ 
  Pahal.F02029.1  9 ERIENTTNRQVTFSKRRTGLFKKAKELAILCDAEVGLIVFSSTGRLYDFT 58
                    69**********************************************96 PP

2K-box75.11.9e-2580169998
           K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                      ++a+a+ +q+e+  L+++++nLq+ + +l+G++L+ L++k+Lq+Le+ Le sl++iR kK++l+++qi+el  k   l++en +L +k+
  Pahal.F02029.1  80 SATAEAKLWQREAGILRQQLHNLQEHHLQLMGQQLSCLDVKDLQNLENTLEMSLRNIRLKKDQLMTDQIQELNTKGSLLHKENIELYNKF 169
                     56788999******************************************************************************9997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004325.2E-39160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006631.749161IPR002100Transcription factor, MADS-box
CDDcd002656.10E-43278No hitNo description
SuperFamilySSF554553.66E-32282IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004049.4E-28323IPR002100Transcription factor, MADS-box
PfamPF003192.1E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004049.4E-282338IPR002100Transcription factor, MADS-box
PRINTSPR004049.4E-283859IPR002100Transcription factor, MADS-box
PfamPF014862.9E-2483169IPR002487Transcription factor, K-box
PROSITE profilePS5129714.19585175IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MGRGKIVIER IENTTNRQVT FSKRRTGLFK KAKELAILCD AEVGLIVFSS TGRLYDFTNT  60
SMKSVIERYH EAKDHHVIMS ATAEAKLWQR EAGILRQQLH NLQEHHLQLM GQQLSCLDVK  120
DLQNLENTLE MSLRNIRLKK DQLMTDQIQE LNTKGSLLHK ENIELYNKFN CIHQENTEIK  180
KKVYGQGVNE HPTDTAVKHR IVNLEDEDVA VNLELSQPQN VESEKSGTPS LGEDDKN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P1e-20176176Myocyte-specific enhancer factor 2B
1tqe_Q1e-20176176Myocyte-specific enhancer factor 2B
1tqe_R1e-20176176Myocyte-specific enhancer factor 2B
1tqe_S1e-20176176Myocyte-specific enhancer factor 2B
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004973502.11e-130PREDICTED: MADS-box transcription factor 23-like
SwissprotQ6EP491e-95MAD27_ORYSJ; MADS-box transcription factor 27
TrEMBLA0A0E0LV501e-106A0A0E0LV50_ORYPU; Uncharacterized protein
STRINGOB08G23110.11e-104(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP61435130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37940.15e-77AGAMOUS-like 21